Package: mixmeta 1.2.0

mixmeta: An Extended Mixed-Effects Framework for Meta-Analysis

A collection of functions to perform various meta-analytical models through a unified mixed-effects framework, including standard univariate fixed and random-effects meta-analysis and meta-regression, and non-standard extensions such as multivariate, multilevel, longitudinal, and dose-response models.

Authors:Antonio Gasparrini [aut, cre], Francesco Sera [aut]

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mixmeta.pdf |mixmeta.html✨
mixmeta/json (API)
NEWS

# Install 'mixmeta' in R:
install.packages('mixmeta', repos = c('https://gasparrini.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gasparrini/mixmeta/issues

Datasets:
  • alcohol - Alcohol Intake and Colorectal Cancer
  • bcg - Efficacy of BCG Vaccine in the Prevention of Tuberculosis
  • berkey98 - Five Published Trials on Periodontal Disease
  • dbs - Deep-Brain Stimulation for Patients with Parkinson's Disease
  • fibrinogen - Fibrinogen Studies Collaboration
  • gliomas - Randomized Trials on Therapies for Malignant Gliomas
  • hsls - High School Longitudinal Study
  • hyp - Ten Studies Assessing an Hypertension Treatment
  • p53 - Mutant p53 Gene and Squamous Cell Carcinoma
  • school - Studies on Modified School Calendar and Student Achievement
  • smoking - Meta-Analysis of Interventions to Promote Smoking Cessation
  • thrombolytic - Randomized Trials of Thrombolytic Therapy

On CRAN:

6.81 score 12 stars 13 packages 54 scripts 1.3k downloads 4 mentions 32 exports 0 dependencies

Last updated 3 years agofrom:468f04061f. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 23 2024
R-4.5-winNOTEOct 23 2024
R-4.5-linuxNOTEOct 23 2024
R-4.4-winNOTEOct 23 2024
R-4.4-macNOTEOct 23 2024
R-4.3-winNOTEOct 23 2024
R-4.3-macNOTEOct 23 2024

Exports:bdiagMatblupblup.mixmetacoef.mixmetainputcovinputnalogLik.mixmetamixmetamixmeta.controlmixmeta.fitmixmeta.fixedmixmeta.mlmixmeta.mmmixmeta.remlmixmeta.vcmixmetaSimmodel.frame.mixmetamodel.matrix.mixmetana.exclude.data.frame.mixmetana.omit.data.frame.mixmetapredict.mixmetaprint.mixmetaprint.qtest.mixmetaprint.summary.mixmetaqtestqtest.mixmetasimulate.mixmetasummary.mixmetaterms.mixmetavcov.mixmetavechMatxpndMat

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
An Extended Mixed-Effects Framework for Meta-Analysismixmeta-package
Alcohol Intake and Colorectal Canceralcohol
Efficacy of BCG Vaccine in the Prevention of Tuberculosisbcg
Block-Diagonal Expansion of a List of MatricesbdiagMat
Five Published Trials on Periodontal Diseaseberkey98
Best Linear Unbiased Predictionsblup
Best Linear Unbiased Predictions from mixmeta Modelsblup.mixmeta
Extract Coefficients and (Co)Variance Matrix from mixmeta Objectscoef.mixmeta vcov.mixmeta
Deep-Brain Stimulation for Patients with Parkinson's Diseasedbs
Fibrinogen Studies Collaborationfibrinogen
Randomized Trials on Therapies for Malignant Gliomasgliomas
High School Longitudinal Studyhsls
Ten Studies Assessing an Hypertension Treatmenthyp
Input (Co)Variance Matricesinputcov
Input Missing Valuesinputna
Extract Log-Likelihood from mixmeta ObjectslogLik.mixmeta
Fitting Standard and Extended Meta-Analysis and Meta-Regression Modelsmixmeta mixmeta.fit
Ancillary Parameters for Controlling the Fit in mixmeta Modelsmixmeta.control
Fixed-Effects Estimator for mixmeta Modelsmixmeta.fixed
ML and REML Estimators for mixmeta Modelsmixmeta.ml mixmeta.reml
Method of Moments Estimator for mixmeta Modelsmixmeta.mm
Variance Components Estimator for mixmeta Modelsmixmeta.vc
(Co)variance Structures for mixmeta ModelsmixmetaCovStruct
Formulae in mixmeta ModelsmixmetaFormula
mixmeta ObjectsmixmetaObject
Simulating Responses for mixmeta ModelsmixmetaSim simulate.mixmeta
IGLS and RIGLS Iterative Algorithms for mixmeta Modelsigls.iter ml.igls reml.rigls rigls.iter
Likelihood Functions for mixmeta Modelsml.loglik.fn ml.loglik.gr reml.loglik.fn reml.loglik.gr
Quasi-Newton Iterative Algorithms for mixmeta Modelsml.newton reml.newton
Extract Model Frame and Design Matrix from mixmeta Objectsmodel.frame.mixmeta model.matrix.mixmeta
Handling Missing Values in mixmeta Modelsna.exclude.data.frame.mixmeta na.omit.data.frame.mixmeta
Mutant p53 Gene and Squamous Cell Carcinomap53
Predicted Values from mixmeta Modelspredict.mixmeta
Cochran Q Test of Heterogeneityqtest
Cochran Q Test of Heterogeneity for mixmeta Modelsprint.qtest.mixmeta qtest.mixmeta
Studies on Modified School Calendar and Student Achievementschool
Meta-Analysis of Interventions to Promote Smoking Cessationsmoking
Summarizing mixmeta Modelsprint.mixmeta print.summary.mixmeta summary.mixmeta
Extract Model Terms from mixmeta Objectsterms.mixmeta
Randomized Trials of Thrombolytic Therapythrombolytic
Vectorization and Expansion of Symmetric MatricesvechMat xpndMat